Guide

Getting started

See here for more options:

$ curl -fsSL https://install.julialang.org | sh

Note: this command also installs the JuliaUp installation manager, which will automatically install julia and help keep it up to date.

Launch julia by running julia in a shell. Then, enter the Pkg REPL by pressing ]. Finally, add the BergmanLabRegistry by running:

pkg> registry add https://github.com/drbergman-lab/BergmanLabRegistry

Still in the Pkg REPL, run:

pkg> add PhysiCellXMLRules

To convert a PhysiCell rules file (in CSV format) into an XML format, use

using PhysiCellXMLRules
new_file = "rules.xml"
source_file = "rules.csv"
writeXMLRules(new_file, source_file)

To convert from the XML format to the CSV format, use

using PhysiCellXMLRules
new_file = "rules.csv"
source_file = "rules.xml"
exportCSVRules(new_file, source_file)