Known limitations
Always select all simulations associated with a Monad
Anytime a group of simulation replicates (a Monad in PhysiCellModelManager.jl internals) is requested, all simulations in that group are used, regardless of the value of n_replicates.
Initial conditions not loaded when launching PhysiCell Studio for a simulation.
When launching PhysiCell Studio from PhysiCellModelManager.jl, the initial conditions (cells and substrates) are not loaded.
Limited intracellular models
Currently only supports ODE intracellular models (using libRoadRunner). Does not support MaBoSS or dFBA.