Known limitations

Always select all simulations associated with a Monad

Anytime a group of simulation replicates (a Monad in PhysiCellModelManager.jl internals) is requested, all simulations in that group are used, regardless of the value of n_replicates. If the number of simulations in the group is less than n_replicates, then additional simulations are run to reach n_replicates. Note: if use_previous=false, then n_replicates will be run regardless and the returned Monad will only have the newly-run simulations. If you do need an upper bound on the number of simulations in such a grouping, submit an issue. It is assumed that most, if not all use cases, will benefit from more simulations.

Initial conditions not loaded when launching PhysiCell Studio for a simulation.

When launching PhysiCell Studio from PhysiCellModelManager.jl, the initial conditions (cells and substrates) are not loaded.

Limited intracellular models

Currently only supports ODE intracellular models (using libRoadRunner). Does not support MaBoSS or dFBA.